Deprecated Methods

seriate_reciprocal(object, ...)

refine_seriation(object, ...)

# S4 method for CountMatrix
seriate_reciprocal(object, EPPM = FALSE, margin = c(1, 2), stop = 100)

# S4 method for IncidenceMatrix
seriate_reciprocal(object, margin = c(1, 2), stop = 100)

# S4 method for CountMatrix
refine_seriation(object, cutoff, n = 1000, axes = c(1, 2), ...)

Arguments

object

An object.

...

Currently not used.

EPPM

A logical scalar: should the seriation be computed on EPPM instead of raw data?

margin

A numeric vector giving the subscripts which the rearrangement will be applied over: 1 indicates rows, 2 indicates columns, c(1, 2) indicates rows then columns, c(2, 1) indicates columns then rows.

stop

An integer giving the stopping rule (i.e. maximum number of iterations) to avoid infinite loop.

cutoff

A function that takes a numeric vector as argument and returns a single numeric value (see below).

n

A non-negative integer giving the number of bootstrap replications (see below).

axes

A numeric vector giving the subscripts of the CA axes to be used (see below).

Author

N. Frerebeau