Diversity Measures

diversity() evenness()

Heterogeneity and Evenness

richness() rarefaction()

Richness and Rarefaction

similarity()

Similarity

turnover()

Turnover

Dating Methods

get_dates() `set_dates<-`() date_mcd() date_event() refine_dates()

Date Archaeological Assemblages

Seriation Methods

seriate_reciprocal() seriate_correspondence() permute() refine_seriation() get_order()

Matrix Seriation

Visualization Methods

plot_bertin() plot_ford()

Bar Plot

plot_date() plot_time()

Date and Time Plot

plot_rank()

Line Plot

plot_heatmap()

Heatmap

plot_spot()

Spot Plot

Tests

test_diversity() test_fit()

Tests on Abundance Data

Classes

CountMatrix()

Count matrix

FrequencyMatrix-class

Frequency matrix

IncidenceMatrix()

Incidence matrix

OccurrenceMatrix-class

Co-occurrence matrix

SimilarityMatrix-class

Similarity matrix

as_count() as_frequency() as_incidence() as_occurrence() as_similarity()

Coerce

BootCA-class

Partial bootstrap CA

DateModel-class

Date model

PermutationOrder-class

Permutation order

Getters and Setters

get_id() get_totals() `set_totals<-`()

Get or Set Parts of an Object

`[`(<BootCA>) `[`(<DateModel>) `[[`(<DateModel>) `[[`(<BootCA>) `[[`(<PermutationOrder>) `[[`(<SpaceTime>) `[[`(<CountMatrix>) `[[`(<FrequencyMatrix>) `[[`(<IncidenceMatrix>) `[[`(<OccurrenceMatrix>) `[[`(<SimilarityMatrix>)

Extract or Replace Parts of an Object

Data

boves

Boves ceramics

compiegne

Compiègne ceramics

merzbach

Merzbach ceramics

mississippi

Mississippi ceramics

zuni

Zuni ceramics